You take care of that part later, I guess. The whole point of the shower orange IMO is to go primal on it and tear it open and chow down without concern for mess or eating it efficiently. Leaving the peel to pick up afterwards probably just gives the rest of your shower a nice citrus aroma.
Your example is unambiguously plural. It’s not a good illustration of “they” creating confusion.
It’s truly not a problem. I could contrive a reason to talk about a couple (they plural) and a nonbinary person (they singular) and end up with sentences where you don’t know which I’m referring to, but the exact same issue happens if I’m telling a story about two “he” or “she” subjects. And it’s solved in the same way.